Package: QHScrnomo 3.0.1.9000

Zajichek Alex

QHScrnomo: Construct Nomograms for Competing Risks Regression Models

Nomograms are constructed to predict the cumulative incidence rate which is calculated after adjusting for competing causes to the event of interest. K-fold cross-validation is implemented to validate predictive accuracy using a competing-risk version of the concordance index. Methods are as described in: Kattan MW, Heller G, Brennan MF (2003).

Authors:Michael Kattan [aut], Changhong Yu [aut], Xinge Ji [aut], Zajichek Alex [cre]

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QHScrnomo.pdf |QHScrnomo.html✨
QHScrnomo/json (API)
NEWS

# Install 'QHScrnomo' in R:

install.packages('QHScrnomo', repos = c('https://clevelandclinicqhs.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/clevelandclinicqhs/qhscrnomo/issues

Datasets:

prostate.dat - Prostate cancer data set

On CRAN:

4.60 score 8 stars 5 scripts 233 downloads 8 exports 78 dependencies

Last updated 8 months agofrom:437b8e0906. Checks:OK: 7 NOTE: 2. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 14 2024
R-4.5-win-x86_64	NOTE	Nov 14 2024
R-4.5-linux-x86_64	NOTE	Nov 14 2024
R-4.4-win-x86_64	OK	Nov 14 2024
R-4.4-mac-x86_64	OK	Nov 14 2024
R-4.4-mac-aarch64	OK	Nov 14 2024
R-4.3-win-x86_64	OK	Aug 16 2024
R-4.3-mac-x86_64	OK	Aug 16 2024
R-4.3-mac-aarch64	OK	Aug 16 2024

Exports:cindex crr.fit groupci nomogram.crr nomogram.mk6 pred.ci sas.cmprsk tenf.crr

Dependencies:backports base64enc bslib cachem checkmate cli cluster cmprsk codetools colorspace data.table digest evaluate fansi farver fastmap fontawesome foreign Formula fs ggplot2 glue gridExtra gtable highr Hmisc htmlTable htmltools htmlwidgets isoband jquerylib jsonlite knitr labeling lattice lifecycle magrittr MASS Matrix MatrixModels memoise mgcv mime multcomp munsell mvtnorm nlme nnet pillar pkgconfig polspline quantreg R6 rappdirs RColorBrewer rlang rmarkdown rms rpart rstudioapi sandwich sass scales SparseM stringi stringr survival TH.data tibble tinytex utf8 vctrs viridis viridisLite withr xfun yaml zoo

QHScrnomo

Rendered fromQHScrnomo.Rmdusingknitr::rmarkdownon Nov 14 2024.

Last update: 2023-04-17
Started: 2023-04-17

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
ANOVA Table for a Competing Risks Regression Model	anova.cmprsk
Concordance Index Calculation (C-Index)	cindex
Fit A Competing Risks Regression Model	crr.fit
Assess Calibration for a Competing Risks Endpoint	groupci
Change the Predictor Labels for a Competing Risks Regression Model	Newlabels.cmprsk
Change the Level Labels of Categorical Predictors for a Competing Risks Regression Model	Newlevels.cmprsk
Construct a Nomogram for a Competing Risks Regression Model	nomogram.crr
Construct a Nomogram for a Regression Model	nomogram.mk6
Extract Cumulative Incidence Estimates at a Specified Time Point	pred.ci
Calculate the Failure Time Probability from a Competing Risks Regression Model	predict.cmprsk
Prostate cancer data set	prostate.dat
Generate a Prediction Equation for a Competing Risks Regression Model	sas.cmprsk
Summary of a Competing Risks Regression Model	summary.cmprsk
Obtain K-Fold Cross-Validated Predictions	tenf.crr