{ "_id": "6a33b6d43efcd9bda43aeb26", "Package": "QHScrnomo", "Title": "Construct Nomograms for Competing Risks Regression Models", "Version": "3.0.2.9000", "Authors@R": "c(\nperson(\"Michael\", \"Kattan\", email = \"kattanm@ccf.org\", role = \"aut\"),\nperson(\"Changhong\", \"Yu\", email = \"yuc@ccf.org\", role = \"aut\"),\nperson(\"Xinge\", \"Ji\", email = \"jix@ccf.org\", role = \"aut\"),\nperson(\"Zajichek\", \"Alex\", email = \"zajicha2@ccf.org\", role = \"cre\"))", "Description": "Nomograms are constructed to predict the cumulative\nincidence rate which is calculated after adjusting for\ncompeting causes to the event of interest. K-fold\ncross-validation is implemented to validate predictive accuracy\nusing a competing-risk version of the concordance index.\nMethods are as described in: Kattan MW, Heller G, Brennan MF\n(2003).", "License": "GPL (>= 3)", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "Config/testthat/edition": "3", "LazyData": "true", "URL": "https://github.com/ClevelandClinicQHS/QHScrnomo", "BugReports": "https://github.com/ClevelandClinicQHS/QHScrnomo/issues", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev", "Repository": "https://clevelandclinicqhs.r-universe.dev", "Date/Publication": "2025-07-23 17:48:14 UTC", "RemoteUrl": "https://github.com/clevelandclinicqhs/qhscrnomo", "RemoteRef": "HEAD", "RemoteSha": "8650633cf4d90545b6cba6f19efec0d3a4a5f7ae", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-18 09:08:25 UTC", "User": "root" }, "Author": "Michael Kattan [aut],\nChanghong Yu [aut],\nXinge Ji [aut],\nZajichek Alex [cre]", "Maintainer": "Zajichek Alex ", "MD5sum": "4a287a1aac31286138d16ff908e0e7a0", "_user": "clevelandclinicqhs", "_type": "src", "_file": "QHScrnomo_3.0.2.9000.tar.gz", "_fileid": "4b3ac12e6c28838659d1c7d1bfb49956563b9787d496f8b060ff9400014d9d7c", "_filesize": 515137, "_sha256": "4b3ac12e6c28838659d1c7d1bfb49956563b9787d496f8b060ff9400014d9d7c", "_created": "2026-06-18T09:08:25.000Z", "_published": "2026-06-18T09:13:56.449Z", "_distro": "noble", "_jobs": [ { "job": 82094454042, "time": 175, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7719029958" }, { "job": 82094454069, "time": 197, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7719037555" }, { "job": 82094454043, "time": 179, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7719032545" }, { "job": 82094454026, "time": 186, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7719036387" }, { "job": 82094454152, "time": 141, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7719017441" }, { "job": 82094454153, "time": 261, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "7719061381" }, { "job": 82094454082, "time": 152, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7719021292" }, { "job": 82094454030, "time": 282, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7719068895" }, { "job": 82093749199, "time": 228, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7718963468" }, { "job": 82094454016, "time": 124, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7719010864" }, { "job": 82094454125, "time": 180, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7719032214" }, { "job": 82094454109, "time": 173, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7719029195" }, { "job": 82094454172, "time": 166, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7719026730" } ], "_buildurl": "https://github.com/r-universe/clevelandclinicqhs/actions/runs/27748778140", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/clevelandclinicqhs/qhscrnomo", "_commit": { "id": "8650633cf4d90545b6cba6f19efec0d3a4a5f7ae", "author": "zajichek ", "committer": "zajichek ", "message": "CRAN submit\n", "time": 1753292894 }, "_maintainer": { "name": "Zajichek Alex", "email": "zajicha2@ccf.org", "login": "zajicha2", "description": "", "uuid": 294558545 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "rms", "role": "Depends" }, { "package": "cmprsk", "role": "Imports" }, { "package": "Hmisc", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "clevelandclinicqhs", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-30", "n": 4 } ], "_tags": [ { "name": "v3.0.2", "date": "2025-07-23" } ], "_stars": 9, "_contributors": [ { "user": "zajichek", "count": 6, "uuid": 46714834 } ], "_userbio": { "uuid": 126189471, "type": "organization", "name": "Cleveland Clinic Quantitative Health Sciences", "followers": 28, "description": "Open-source projects from the Department of Quantitative Health Sciences at Cleveland Clinic" }, "_downloads": { "count": 254, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/QHScrnomo" }, "_devurl": "https://github.com/clevelandclinicqhs/qhscrnomo", "_searchresults": 8, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/QHScrnomo.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/clevelandclinicqhs/qhscrnomo", "_realowner": "clevelandclinicqhs", "_cranurl": true, "_releases": [ { "version": "2.2.0", "date": "2021-11-05" }, { "version": "3.0.0", "date": "2023-04-18" }, { "version": "3.0.1", "date": "2024-03-18" }, { "version": "3.0.2", "date": "2025-07-23" } ], "_exports": [ "cindex", "crr.fit", "groupci", "nomogram.crr", "nomogram.mk6", "pred.ci", "sas.cmprsk", "tenf.crr" ], "_datasets": [ { "name": "prostate.dat", "title": "Prostate cancer data set", "object": "prostate.dat", "class": [ "data.frame" ], "fields": [ "UNIQID", "TX", "PSA", "BX_GLSN_CAT", "CLIN_STG", "AGE", "RACE_AA", "TIME_EVENT", "EVENT_DOD" ], "rows": 2000, "table": true, "tojson": true } ], "_help": [ { "page": "anova.cmprsk", "title": "ANOVA Table for a Competing Risks Regression Model", "topics": [ "anova.cmprsk" ] }, { "page": "cindex", "title": "Concordance Index Calculation (C-Index)", "topics": [ "cindex" ] }, { "page": "crr.fit", "title": "Fit A Competing Risks Regression Model", "topics": [ "crr.fit" ] }, { "page": "groupci", "title": "Assess Calibration for a Competing Risks Endpoint", "topics": [ "groupci" ] }, { "page": "Newlabels.cmprsk", "title": "Change the Predictor Labels for a Competing Risks Regression Model", "topics": [ "Newlabels.cmprsk" ] }, { "page": "Newlevels.cmprsk", "title": "Change the Level Labels of Categorical Predictors for a Competing Risks Regression Model", "topics": [ "Newlevels.cmprsk" ] }, { "page": "nomogram.crr", "title": "Construct a Nomogram for a Competing Risks Regression Model", "topics": [ "nomogram.crr" ] }, { "page": "nomogram.mk6", "title": "Construct a Nomogram for a Regression Model", "topics": [ "nomogram.mk6" ] }, { "page": "pred.ci", "title": "Extract Cumulative Incidence Estimates at a Specified Time Point", "topics": [ "pred.ci" ] }, { "page": "predict.cmprsk", "title": "Calculate the Failure Time Probability from a Competing Risks Regression Model", "topics": [ "predict.cmprsk" ] }, { "page": "prostate.dat", "title": "Prostate cancer data set", "topics": [ "prostate.dat" ] }, { "page": "sas.cmprsk", "title": "Generate a Prediction Equation for a Competing Risks Regression Model", "topics": [ "sas.cmprsk" ] }, { "page": "summary.cmprsk", "title": "Summary of a Competing Risks Regression Model", "topics": [ "summary.cmprsk" ] }, { "page": "tenf.crr", "title": "Obtain K-Fold Cross-Validated Predictions", "topics": [ "tenf.crr" ] } ], "_pkglogo": "https://github.com/clevelandclinicqhs/qhscrnomo/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/clevelandclinicqhs/qhscrnomo/raw/HEAD/README.md", "_rundeps": [ "backports", "base64enc", "bslib", "cachem", "checkmate", "cli", "cluster", "cmprsk", "codetools", "colorspace", "cpp11", "data.table", "digest", "evaluate", "farver", "fastmap", "fontawesome", "foreign", "Formula", "fs", "ggplot2", "glue", "gridExtra", "gtable", "highr", "Hmisc", "htmlTable", "htmltools", "htmlwidgets", "isoband", "jquerylib", "jsonlite", "knitr", "labeling", "lattice", "lifecycle", "magrittr", "MASS", "Matrix", "MatrixModels", "memoise", "mime", "multcomp", "mvtnorm", "nlme", "nnet", "polspline", "quantreg", "R6", "rappdirs", "RColorBrewer", "rlang", "rmarkdown", "rms", "rpart", "rstudioapi", "S7", "sandwich", "sass", "scales", "SparseM", "stringi", "stringr", "survival", "TH.data", "tinytex", "vctrs", "viridisLite", "withr", "xfun", "yaml", "zoo" ], "_vignettes": [ { "source": "QHScrnomo.Rmd", "filename": "QHScrnomo.html", "title": "QHScrnomo", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Example Data Set", "Steps to construct a nomogram", "1. Fit a competing risks regression model", "2. Summarize and assess model output", "3. Validate model predictions", "Generate cross-validated predictions", "Compute the concordance index (C-Index)", "Assess model calibration", "4. Create the nomogram", "Other functions", "Generate the model equation", "Create \"nice\" output from cuminc", "Calculate predicted probabilities" ], "created": "2023-04-17 17:45:57", "modified": "2023-04-17 17:45:57", "commits": 1 } ], "_score": 4.653212513775344, "_indexed": true, "_nocasepkg": "qhscrnomo", "_universes": [ "clevelandclinicqhs", "zajicha2" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "3.0.2.9000", "date": "2026-06-18T09:10:42.000Z", "distro": "noble", "arch": "aarch64", "commit": "8650633cf4d90545b6cba6f19efec0d3a4a5f7ae", "fileid": "3ba18f9bbc5cf4b36fd8b745579144a2346b2ef48925a386fc3a6b3ef1feae7d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/clevelandclinicqhs/actions/runs/27748778140" }, { "r": "4.7.0", "os": "linux", "version": "3.0.2.9000", "date": "2026-06-18T09:10:51.000Z", "distro": "noble", "arch": "x86_64", "commit": "8650633cf4d90545b6cba6f19efec0d3a4a5f7ae", "fileid": "d8dc6499973f27b9bbf82975a95d921cf70def3dbe77a74ad9bd797fee19f6fb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/clevelandclinicqhs/actions/runs/27748778140" }, { "r": "4.6.0", "os": "linux", "version": "3.0.2.9000", "date": "2026-06-18T09:10:48.000Z", "distro": "noble", "arch": "aarch64", "commit": "8650633cf4d90545b6cba6f19efec0d3a4a5f7ae", "fileid": "d25019b3c8d2e2ea51c3bf0bfd041a48566a6b851af14ec1792e7f68cb044f70", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/clevelandclinicqhs/actions/runs/27748778140" }, { "r": "4.6.0", "os": "linux", "version": "3.0.2.9000", "date": "2026-06-18T09:10:52.000Z", "distro": "noble", "arch": "x86_64", "commit": "8650633cf4d90545b6cba6f19efec0d3a4a5f7ae", "fileid": "96526538f97460551581b22801ed216760d2d2bc54023868fc6441ce7ed41cf8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/clevelandclinicqhs/actions/runs/27748778140" }, { "r": "4.5.3", "os": "mac", "version": "3.0.2.9000", "date": "2026-06-18T09:10:10.000Z", "arch": "aarch64", "commit": "8650633cf4d90545b6cba6f19efec0d3a4a5f7ae", "fileid": "94426f553d158e28b4d8cfb5f28141c4aa59e348686aec3cf998eaad5d34ab12", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/clevelandclinicqhs/actions/runs/27748778140" }, { "r": "4.5.3", "os": "mac", "version": "3.0.2.9000", "date": "2026-06-18T09:11:21.000Z", "arch": "x86_64", "commit": "8650633cf4d90545b6cba6f19efec0d3a4a5f7ae", "fileid": "2b7234d22b1ad652aa5ff124947da7c598af0b5837d04fc8e53de9de241638bf", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/clevelandclinicqhs/actions/runs/27748778140" }, { "r": "4.6.0", "os": "mac", "version": "3.0.2.9000", "date": "2026-06-18T09:10:13.000Z", "arch": "aarch64", "commit": "8650633cf4d90545b6cba6f19efec0d3a4a5f7ae", "fileid": "143bc8f2817d72ff0cd44c63f906e1ed624dfb7ef72f5c326854188515ade897", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/clevelandclinicqhs/actions/runs/27748778140" }, { "r": "4.6.0", "os": "mac", "version": "3.0.2.9000", "date": "2026-06-18T09:11:34.000Z", "arch": "x86_64", "commit": "8650633cf4d90545b6cba6f19efec0d3a4a5f7ae", "fileid": "31d6872ac2324cda4e7fc1b5738a9e33113bdade736025dff0f7dd65fd88966d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/clevelandclinicqhs/actions/runs/27748778140" }, { "r": "4.6.0", "os": "wasm", "version": "3.0.2.9000", "date": "2026-06-18T09:10:53.000Z", "arch": "emscripten", "commit": "8650633cf4d90545b6cba6f19efec0d3a4a5f7ae", "fileid": "c4e7063bf85dd4ae7b4ea7281e30e8eb82c1b4c1b3ce476d2e0ffbdb09de4ab7", "status": "success", "buildurl": "https://github.com/r-universe/clevelandclinicqhs/actions/runs/27748778140" }, { "r": "4.7.0", "os": "win", "version": "3.0.2.9000", "date": "2026-06-18T09:09:59.000Z", "arch": "x86_64", "commit": "8650633cf4d90545b6cba6f19efec0d3a4a5f7ae", "fileid": "89c0890df82d9230039d40e6768c0a646cc92dfaf3b85220ab4d9a391b4875ba", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/clevelandclinicqhs/actions/runs/27748778140" }, { "r": "4.5.3", "os": "win", "version": "3.0.2.9000", "date": "2026-06-18T09:09:52.000Z", "arch": "x86_64", "commit": "8650633cf4d90545b6cba6f19efec0d3a4a5f7ae", "fileid": "39b162ef20e7e8ddc4f604dd98318770d64e53c7ac80b0672c8c16fbd0c7fbd9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/clevelandclinicqhs/actions/runs/27748778140" }, { "r": "4.6.0", "os": "win", "version": "3.0.2.9000", "date": "2026-06-18T09:09:48.000Z", "arch": "x86_64", "commit": "8650633cf4d90545b6cba6f19efec0d3a4a5f7ae", "fileid": "4baa4f4325641a7ad0b58dd9bc9545dfd73a444967e080bae197df76609a4346", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/clevelandclinicqhs/actions/runs/27748778140" } ] }